species:   Fugra
pid:       PID0936
parent:    FgmilR-7dps-33
paralog:   
locus:     NC_026475.1:8621731-8621859
matures:   ['UAAGAUUGAGAGCCUGGCUAC', 'AGUCUGAGGCUGAGAUUGAGAU']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026475.1:8621731-8621859

9 out of bounds
30 alignments
7 proper strand
7 stranded perfect matches

             **********************                                                            ********************              
UGCUGGUUUGCUGGUUGAACUGAGUCUGAGGCUGAGAUUGAGAUGGAAUCGUGGGCAUGGUUUGCAUGGCAGUCAUCGCGCUGAGAUUAAGAUUGAGAGCCUGGCUACCGUCGACCAGCUGGUGCAGCA
(((((....(((((((((....((((..(((((..((((..(((.....(((((.((((.....)))).)......)))).....)))..))))...)))))))))....))))))))).....)))))
---------------------------------------------------------------------------------------UAAGAUUGAGAGCCUGGCUAC--------------------- l=21 a=0 c
----------------------AGUCUGAGGCUGAGAUUGAGAU------------------------------------------------------------------------------------- l=22 a=0 c*
---------------UGAACUGAGUCUGAGGCUGA---------------------------------------------------------------------------------------------- l=20 a=5 ma
-------------------------------------------------------------------------------------------------AGCCUGGCUACCGUCGAC-------------- l=18 a=0 ma*

----------------------------------------------------------------------------------------AAGAUUGAGAGCCUGGCUACC-------------------- l=21 a=1 
-------------------------------------------UGGAAUCGUGGGCAUGGUUUGCA--------------------------------------------------------------- l=23 a=1 
---------------UGAACUGAGUCUGAGGCUGA---------------------------------------------------------------------------------------------- l=20 a=5 (ma)

mb-01111
ax-1001011
ku-01
ss-101110001100
fn-101
